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    LOC4349999 uncharacterized LOC4349999 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349999, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349999
    Gene description
    uncharacterized LOC4349999
    Locus tag
    OSNPB_110198200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 7.5), roots before flowering (RPKM 7.1) and 6 other tissues See more
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    Genomic context

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    See LOC4349999 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4979510..4981302, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4923845..4925703, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os11g0197600-like Neighboring gene probable hexosyltransferase MUCI70 Neighboring gene uncharacterized LOC107279341 Neighboring gene protein ACCELERATED CELL DEATH 6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349999
    Names
    Os11g0198200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4979510..4981302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762119.3 → XP_015617605.1  uncharacterized protein LOC4349999 isoform X2

      UniProtKB/TrEMBL
      A2ZCE0

    2. XM_015762117.3 → XP_015617603.1  uncharacterized protein LOC4349999 isoform X1

      UniProtKB/TrEMBL
      A2ZCE0, Q2R9D0, Q53LR4
    Nucleotide Protein
    Heading Accession and Version

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