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    LOC4345203 HSP-interacting protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345203, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345203
    Gene description
    HSP-interacting protein
    Locus tag
    OSNPB_080296900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345203 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (12059389..12064486, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (11984648..11989840, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351541 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC4345204 Neighboring gene cytosolic sulfotransferase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HSP-interacting protein
    Names
    Os08g0296900
    P0024C06.105-1
    putative octicosapeptide/Phox/Bem1p (PB1) domain-/tetratricopeptide repeat (TPR)-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      12059389..12064486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795131.3 → XP_015650617.1  HSP-interacting protein

      UniProtKB/TrEMBL
      A0A0P0XF00, A0A5S6RCH7, A2YTN6, Q0J6M3, Q69QX2
      Conserved Domains (3) summary
      smart00666
      Location:320 → 395
      PB1; PB1 domain
      TIGR00990
      Location:30 → 118
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:27 → 55
      TPR; TPR repeat [structural motif]

    2. XM_015795132.3 → XP_015650618.1  HSP-interacting protein

      UniProtKB/TrEMBL
      A0A0P0XF00, A0A5S6RCH7, A2YTN6, Q0J6M3, Q69QX2
      Conserved Domains (3) summary
      smart00666
      Location:320 → 395
      PB1; PB1 domain
      TIGR00990
      Location:30 → 118
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:27 → 55
      TPR; TPR repeat [structural motif]

    3. XM_015795130.3 → XP_015650616.1  HSP-interacting protein

      UniProtKB/TrEMBL
      A0A0P0XF00, A0A5S6RCH7, A2YTN6, Q0J6M3, Q69QX2
      Conserved Domains (3) summary
      smart00666
      Location:320 → 395
      PB1; PB1 domain
      TIGR00990
      Location:30 → 118
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:27 → 55
      TPR; TPR repeat [structural motif]

    4. XM_026027572.2 → XP_025883357.1  HSP-interacting protein

      UniProtKB/TrEMBL
      A0A0P0XF00, A0A5S6RCH7, A2YTN6, Q0J6M3, Q69QX2
      Conserved Domains (3) summary
      smart00666
      Location:320 → 395
      PB1; PB1 domain
      TIGR00990
      Location:30 → 118
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:27 → 55
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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