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    LOC4341645 pyrophosphate-energized vacuolar membrane proton pump [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341645, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341645
    Gene description
    pyrophosphate-energized vacuolar membrane proton pump
    Locus tag
    OSNPB_060644200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341645 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27136749..27142216)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26272896..26278368)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene phosphoenolpyruvate phosphatase Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene uncharacterized LOC4341646 Neighboring gene protein S-acyltransferase 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of cDNAs encoding vacuolar H(+)-pyrophosphatase isoforms from rice (Oryza sativa L.). Sakakibara Y, et al. Plant Mol Biol, 1996 Aug. PMID 8843945
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables diphosphate hydrolysis-driven proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inorganic diphosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyrophosphate-energized vacuolar membrane proton pump
    Names
    Os06g0644200
    P0017B12.8-1
    P0017B12.8-2
    inorganic diphosphatase, H+-translocating, vacuolar membrane -like
    vacuolar H+-pyrophosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27136749..27142216
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787596.3 → XP_015643082.1  pyrophosphate-energized vacuolar membrane proton pump

      UniProtKB/TrEMBL
      P93409, Q0DAM5, Q67WN5
      Conserved Domains (1) summary
      PLN02255
      Location:13 → 782
      PLN02255; H(+) -translocating inorganic pyrophosphatase
    Nucleotide Protein
    Heading Accession and Version

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