U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341800 OTU domain-containing protein DDB_G0284757 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341800, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4341800
    Gene description
    OTU domain-containing protein DDB_G0284757
    Locus tag
    OSNPB_060669800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 34.6), flower buds (RPKM 29.0) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28608721..28612647)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27743149..27747071)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 7 Neighboring gene protein REVEILLE 6 Neighboring gene molybdenum cofactor sulfurase-like Neighboring gene protein JASON

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    OTU domain-containing protein DDB_G0284757
    Names
    OTU-like cysteine protease-like
    Os06g0669800
    P0686E06.34

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421694.1 → NP_001408623.1  OTU domain-containing protein DDB_G0284757

      Status: VALIDATED

      Source sequence(s)
      AK073551, CI377534, CI392944
      UniProtKB/TrEMBL
      A0A0P0X0B8, B8B169, Q0DA84, Q655R7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28608721..28612647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788240.3 → XP_015643726.2  OTU domain-containing protein DDB_G0284757 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X0B8, B8B169, Q0DA84, Q655R7

    2. XM_015788243.3 → XP_015643729.1  OTU domain-containing protein DDB_G0284757 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X0B8, B8B169, Q0DA84, Q655R7
      Conserved Domains (1) summary
      cl19932
      Location:95 → 179
      OTU; OTU-like cysteine protease

    3. XM_015788242.2 → XP_015643728.1  OTU domain-containing protein DDB_G0284757 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X0B8, B8B169, Q0DA84, Q655R7
      Conserved Domains (1) summary
      cl19932
      Location:95 → 179
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials