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    LOC4331688 probable serine/threonine-protein kinase PBL16 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331688, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331688
    Gene description
    probable serine/threonine-protein kinase PBL16
    Locus tag
    OSNPB_030159100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 28.7), roots before flowering (RPKM 19.4) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3174239..3178028)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3165084..3168841)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene YTH domain-containing protein ECT4 Neighboring gene subtilisin-like protease SBT3.18 Neighboring gene pentatricopeptide repeat-containing protein At3g28660 Neighboring gene uncharacterized LOC4331689 Neighboring gene transcription repressor OFP12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase PBL16
    Names
    Os03g0159100
    probable receptor-like protein kinase At5g56460

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3174239..3178028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308588.1 → XP_066164685.1  probable serine/threonine-protein kinase PBL16 isoform X2

      UniProtKB/TrEMBL
      A0A8J8YDY9, B8ANV0, B9FBF2, Q0DUZ7, Q10RH3, Q8H8B3

    2. XM_015774392.3 → XP_015629878.1  probable serine/threonine-protein kinase PBL16 isoform X1

      UniProtKB/TrEMBL
      Q8H8B3
      Conserved Domains (2) summary
      smart00221
      Location:132 → 410
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:135 → 413
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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