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    LOC4350003 uncharacterized LOC4350003 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350003, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4350003
    Gene description
    uncharacterized LOC4350003
    Locus tag
    OSNPB_110199600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 28.8), mature seeds (RPKM 27.0) and 6 other tissues See more
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    Genomic context

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    See LOC4350003 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5046787..5048551, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4991018..4992945, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase-like 1-1 Neighboring gene uncharacterized LOC136353975 Neighboring gene TOM1-like protein 3 Neighboring gene uncharacterized LOC107277163

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4350003
    Names
    Os11g0199600
    zinc finger CCHC domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5046787..5048551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759684.3 → XP_015615170.1  uncharacterized protein LOC4350003

      UniProtKB/TrEMBL
      A0A0P0Y031, Q0IU15, Q53LQ3
      Conserved Domains (1) summary
      pfam13917
      Location:91 → 128
      zf-CCHC_3; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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