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    LOC9271926 F-box protein At4g22280 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271926, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271926
    Gene description
    F-box protein At4g22280
    Locus tag
    OSNPB_110202300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 13.9), leaves before flowering (RPKM 10.8) and 5 other tissues See more
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    Genomic context

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    See LOC9271926 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5224528..5227771, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5168773..5172277, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At5g22700 Neighboring gene F-box protein At4g09920 Neighboring gene F-box protein At4g22280 Neighboring gene UDP-glycosyltransferase 91D2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein At4g22280
    Names
    Os11g0202300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5224528..5227771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762216.3 → XP_015617702.1  F-box protein At4g22280 isoform X2

      Conserved Domains (2) summary
      sd00032
      Location:171 → 190
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:17 → 55
      F-box; F-box domain

    2. XM_015762215.3 → XP_015617701.1  F-box protein At4g22280 isoform X1

      Conserved Domains (2) summary
      sd00032
      Location:171 → 190
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:17 → 55
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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