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    LOC4342705 uncharacterized LOC4342705 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342705, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342705
    Gene description
    uncharacterized LOC4342705
    Locus tag
    OSNPB_070209700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_A05.38
    Expression
    Biased expression in milk grains (RPKM 3.2), flowers (RPKM 2.8) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (6020642..6022602)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5943790..5946227)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable galactinol--sucrose galactosyltransferase 2 Neighboring gene uncharacterized LOC4342704 Neighboring gene DNA-binding protein EMBP-1 Neighboring gene exocyst complex component EXO70B1 Neighboring gene exocyst complex component EXO70A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342705
    Names
    OSJNBa0008C11.12
    Os07g0209700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      6020642..6022602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790240.3 → XP_015645726.1  uncharacterized protein LOC4342705

      UniProtKB/TrEMBL
      A3BHQ5
      Conserved Domains (1) summary
      pfam07893
      Location:73 → 391
      DUF1668; Protein of unknown function (DUF1668)

    2. XM_015790239.3 → XP_015645725.1  uncharacterized protein LOC4342705

      UniProtKB/TrEMBL
      A3BHQ5
      Conserved Domains (1) summary
      pfam07893
      Location:73 → 391
      DUF1668; Protein of unknown function (DUF1668)

    3. XM_015790241.3 → XP_015645727.1  uncharacterized protein LOC4342705

      UniProtKB/TrEMBL
      A3BHQ5
      Conserved Domains (1) summary
      pfam07893
      Location:73 → 391
      DUF1668; Protein of unknown function (DUF1668)
    Nucleotide Protein
    Heading Accession and Version

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