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    LOC4330510 RNA-binding protein 24 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330510, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330510
    Gene description
    RNA-binding protein 24
    Locus tag
    OSNPB_020714000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330510 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30086167..30090445)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29594572..29598771)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 25 Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like Neighboring gene diacylglycerol O-acyltransferase 2D Neighboring gene pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 24
    Names
    Os02g0714000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424588.1 → NP_001411517.1  RNA-binding protein 24

      Status: VALIDATED

      Source sequence(s)
      AK240636, AP014958, CB642714

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30086167..30090445
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770814.3 → XP_015626300.1  RNA-binding protein 24 isoform X1

      Conserved Domains (1) summary
      cd12384
      Location:37 → 121
      RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

    2. XM_015770816.3 → XP_015626302.1  RNA-binding protein 24 isoform X2

      Conserved Domains (1) summary
      cd12384
      Location:37 → 112
      RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins

    3. XM_015770817.3 → XP_015626303.1  RNA-binding protein 24 isoform X3

      UniProtKB/TrEMBL
      A0A0P0VNT3, Q0DY58
      Conserved Domains (2) summary
      cd12384
      Location:37 → 112
      RRM_RBM24_RBM38_like; RNA recognition motif in eukaryotic RNA-binding protein RBM24, RBM38 and similar proteins
      TIGR01622
      Location:38 → 218
      SF-CC1; splicing factor, CC1-like family
    Nucleotide Protein
    Heading Accession and Version

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