U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4329368 5'-3' exoribonuclease 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329368, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4329368
    Gene description
    5'-3' exoribonuclease 2
    Locus tag
    OSNPB_020481900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4329368 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (17077855..17094421)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16617314..16633950)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279998 Neighboring gene uncharacterized LOC4329367 Neighboring gene ornithine decarboxylase-like Neighboring gene fasciclin-like arabinogalactan protein 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    5'-3' exoribonuclease 2; 5'-3' exoribonuclease 3; 5'-3' exoribonuclease 4
    Names
    OSJNBa0091C16.23-1
    OSJNBa0091C16.23-2
    Os02g0481900
    putative 5'-3' exoribonuclease

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      17077855..17094421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307738.1 → XP_066163835.1  5'-3' exoribonuclease 2 isoform X5

    2. XM_026023518.2 → XP_025879303.1  5'-3' exoribonuclease 4 isoform X1

      Conserved Domains (1) summary
      cl27292
      Location:114 → 634
      XRN_N; XRN 5'-3' exonuclease N-terminus

    3. XM_066307736.1 → XP_066163833.1  5'-3' exoribonuclease 4 isoform X2

    4. XM_026023521.2 → XP_025879306.1  5'-3' exoribonuclease 3 isoform X3

      Conserved Domains (1) summary
      cl27292
      Location:1 → 610
      XRN_N; XRN 5'-3' exonuclease N-terminus

    5. XM_066307737.1 → XP_066163834.1  5'-3' exoribonuclease 2 isoform X4

    6. XM_066307739.1 → XP_066163836.1  5'-3' exoribonuclease 2 isoform X6

    7. XM_015771485.3 → XP_015626971.1  5'-3' exoribonuclease 2 isoform X7

      UniProtKB/TrEMBL
      A0A0P0VJ34, B8AHX3, Q6K2K4
      Conserved Domains (2) summary
      COG5049
      Location:1 → 669
      XRN1; 5'-3' exonuclease [Replication, recombination and repair]
      pfam03159
      Location:1 → 228
      XRN_N; XRN 5'-3' exonuclease N-terminus

    8. XM_026023525.2 → XP_025879310.2  5'-3' exoribonuclease 4 isoform X8

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials