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    LOC4328254 cycloartenol synthase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328254, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328254
    Gene description
    cycloartenol synthase-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 7.5), flower buds (RPKM 3.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2118517..2128123, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 6 Neighboring gene uncharacterized LOC136355331 Neighboring gene squamosa promoter-binding-like protein 3 Neighboring gene aspartate--tRNA ligase 2, cytoplasmic Neighboring gene cycloartenol synthase-like Neighboring gene dolichol-phosphate mannose synthase subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089036.1 Chromosome 2 Reference ASM3414082v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intramolecular transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in triterpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cycloartenol synthase-like
    Names
    Os02g0139500
    NP_001393372.1
    XP_066163077.1
    XP_066163078.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406443.1 → NP_001393372.1  cycloartenol synthase-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      AP014958
      UniProtKB/TrEMBL
      B9F2M7

    RNA

    1. NR_176082.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK103080, CB642443

    2. NR_176083.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK103080, CB642443

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2118517..2128123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306980.1 → XP_066163077.1  cycloartenol synthase-like isoform X1

      UniProtKB/TrEMBL
      B9F2M7

    2. XM_066306981.1 → XP_066163078.1  cycloartenol synthase-like isoform X2

      UniProtKB/TrEMBL
      B9F2M7
    Nucleotide Protein
    Heading Accession and Version

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