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    LOC4342372 U4/U6 small nuclear ribonucleoprotein Prp31 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342372, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342372
    Gene description
    U4/U6 small nuclear ribonucleoprotein Prp31 homolog
    Locus tag
    OSNPB_070141600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1351_C05.114
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 4.3), roots after flowering (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4342372 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2144127..2152184)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene oxygen-evolving enhancer protein 2, chloroplastic Neighboring gene protein FAR1-RELATED SEQUENCE 6 Neighboring gene disease resistance protein PIK6-NP Neighboring gene uncharacterized LOC107281515 Neighboring gene disease resistance protein RGA2 Neighboring gene reticulon-like protein B8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U4/U6 small nuclear ribonucleoprotein Prp31 homolog
    Names
    Os07g0141600
    putative U4/U6 snRNP-associated 61 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2144127..2152184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791238.2 → XP_015646724.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog

      UniProtKB/TrEMBL
      A0A0P0X2D7, A2YI25, B8ASV6, Q0D8P4, Q8H4L0
      Conserved Domains (2) summary
      pfam01798
      Location:116 → 331
      Nop; snoRNA binding domain, fibrillarin
      pfam09785
      Location:346 → 456
      Prp31_C; Prp31 C terminal domain

    2. XM_026027166.1 → XP_025882951.1  U4/U6 small nuclear ribonucleoprotein Prp31 homolog

      UniProtKB/TrEMBL
      A0A0P0X2D7, A2YI25, B8ASV6, Q0D8P4, Q8H4L0
      Conserved Domains (2) summary
      pfam01798
      Location:116 → 331
      Nop; snoRNA binding domain, fibrillarin
      pfam09785
      Location:346 → 456
      Prp31_C; Prp31 C terminal domain

    RNA

    1. XR_001547599.2 RNA Sequence

    2. XR_001547598.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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