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    LOC4330902 replication protein A 70 kDa DNA-binding subunit A-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330902, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330902
    Gene description
    replication protein A 70 kDa DNA-binding subunit A-like
    Locus tag
    OSNPB_020776800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPA1A; RPA70A; OsRPA70a; OsJ_08582; OJ1534_E09.2
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    Genomic context

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    See LOC4330902 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33328161..33331810, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32832938..32836475, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein BIG GRAIN 1-like A Neighboring gene uncharacterized LOC4330901 Neighboring gene growth-regulating factor 1-like Neighboring gene uncharacterized LOC4330904

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Replication protein A large subunit (RPA1a) limits chiasma formation during rice meiosis.
      Title: Replication protein A large subunit (RPA1a) limits chiasma formation during rice meiosis.
    2. CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.
      Title: CHR721, interacting with OsRPA1a, is essential for both male and female reproductive development in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA replication factor A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    replication protein A 70 kDa DNA-binding subunit A
    Names
    LOC_Os02g53680
    OSJNBb0013K01.36
    Replication factor A protein 1A
    Replication protein A 1A
    replication protein A 70kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401988.1 → NP_001388917.1  replication protein A 70 kDa DNA-binding subunit A

      Status: VALIDATED

      Source sequence(s)
      AK059230, AK072308
      UniProtKB/Swiss-Prot
      A0A0P0VQ40, Q6YZ49, Q9AVL8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33328161..33331810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YZ49.1 GenPept UniProtKB/Swiss-Prot:Q6YZ49

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials