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    LOC4329359 type II inositol polyphosphate 5-phosphatase 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329359, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329359
    Gene description
    type II inositol polyphosphate 5-phosphatase 15
    Locus tag
    OSNPB_020477700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    D50
    Expression
    Ubiquitous expression in roots before flowering (RPKM 6.0), flowers (RPKM 6.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16819237..16826213, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16360032..16367068, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267298 Neighboring gene uncharacterized LOC112937905 Neighboring gene uncharacterized LOC9267464 Neighboring gene disease resistance protein PIK5-NP-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. DWARF50 (D50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem. Sato-Izawa K, et al. Plant Cell Environ, 2012 Nov. PMID 22574770
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type II inositol polyphosphate 5-phosphatase 15
    Names
    Os02g0477700
    inositol polyphosphate 5-phosphatase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16819237..16826213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772176.3 → XP_015627662.1  type II inositol polyphosphate 5-phosphatase 15

      UniProtKB/TrEMBL
      E5RT37
      Conserved Domains (3) summary
      sd00039
      Location:474 → 508
      7WD40; WD40 repeat [structural motif]
      cl00490
      Location:566 → 903
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
      cl29593
      Location:444 → 547
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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