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    LOC4325209 factor of DNA methylation 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325209, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325209
    Gene description
    factor of DNA methylation 1
    Locus tag
    OSNPB_010147700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0434B04.7
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    Genomic context

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    See LOC4325209 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2587537..2591549, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2579550..2583569, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 2 Neighboring gene centromere-binding protein 1 Neighboring gene uncharacterized LOC4325210 Neighboring gene triosephosphate isomerase, cytosolic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    factor of DNA methylation 1
    Names
    Os01g0147700
    P0416D03.43
    putative transcription factor X1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2587537..2591549 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766573.3 → XP_015622059.1  factor of DNA methylation 1

      UniProtKB/TrEMBL
      A2WKN0, Q0JQQ0, Q5ZDL5, Q5ZEE6
      Conserved Domains (4) summary
      pfam03470
      Location:75 → 118
      zf-XS; XS zinc finger domain
      pfam03468
      Location:179 → 292
      XS; XS domain
      pfam03469
      Location:567 → 697
      XH; XH domain
      cl02488
      Location:331 → 527
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    Nucleotide Protein
    Heading Accession and Version

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