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    LOC4328266 L-arabinokinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328266, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328266
    Gene description
    L-arabinokinase
    Locus tag
    OSNPB_020141300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1123_E07.2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 11.4), flower buds (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    See LOC4328266 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2238344..2246829, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2230734..2239520, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107275450 Neighboring gene AIG2-like protein D Neighboring gene auxin response factor 5 Neighboring gene uncharacterized LOC4328267 Neighboring gene uncharacterized LOC4328268

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-arabinokinase
    Names
    GHMP kinase-like protein
    Os02g0141300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2238344..2246829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771300.2 → XP_015626786.1  L-arabinokinase

      UniProtKB/TrEMBL
      A0A0P0VER7, B8AHF2, B9F2N4, Q6YX79
      Conserved Domains (2) summary
      PRK03817
      Location:503 → 747
      PRK03817; galactokinase; Provisional
      cl10013
      Location:26 → 345
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version

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