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    LOC4332725 leucine-rich repeat receptor protein kinase HPCA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332725, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332725
    Gene description
    leucine-rich repeat receptor protein kinase HPCA1
    Locus tag
    OSNPB_030329700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332725 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (12172945..12178138)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (12117818..12123082)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 23-like Neighboring gene endoglucanase 9-like Neighboring gene protein PHOSPHATE STARVATION RESPONSE 1-like Neighboring gene probable galacturonosyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor protein kinase HPCA1
    Names
    Os03g0329700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      12172945..12178138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777806.3 → XP_015633292.1  leucine-rich repeat receptor protein kinase HPCA1

      UniProtKB/TrEMBL
      A0A8J8XW75, B8AP14, B9F895, Q10LZ2
      Conserved Domains (3) summary
      PLN00113
      Location:55 → 916
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:646 → 911
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:102 → 126
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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