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    LOC4326124 rust resistance kinase Lr10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326124, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326124
    Gene description
    rust resistance kinase Lr10
    Locus tag
    OSNPB_010113200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326124 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (727382..730121, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (720672..723314, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC136351095 Neighboring gene uncharacterized LOC107278804 Neighboring gene rust resistance kinase Lr10-like Neighboring gene alpha-amylase/trypsin inhibitor Neighboring gene rust resistance kinase Lr10 Neighboring gene uncharacterized LOC4326126

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rust resistance kinase Lr10
    Names
    OSJNBb0032H19.27
    Os01g0113200
    probable receptor-like protein kinase At5g39030
    protein kinase
    putative rust resistance kinase Lr10
    receptor serine/threonine kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      727382..730121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755493.3 → XP_015610979.1  rust resistance kinase Lr10

      UniProtKB/TrEMBL
      O49202, Q94E34
      Conserved Domains (2) summary
      pfam13947
      Location:33 → 97
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:330 → 600
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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