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    LOC4351754 L10-interacting MYB domain-containing protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351754, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351754
    Gene description
    L10-interacting MYB domain-containing protein
    Locus tag
    OSNPB_120207200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 2.4), flowers (RPKM 2.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (5630322..5632662)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5596626..5598977)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 13-like Neighboring gene uncharacterized LOC107278433 Neighboring gene AP-2 complex subunit sigma Neighboring gene transfer RNA asparagine (anticodon GUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    L10-interacting MYB domain-containing protein
    Names
    Os12g0207200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      5630322..5632662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762995.3 → XP_015618481.2  L10-interacting MYB domain-containing protein isoform X1

      UniProtKB/TrEMBL
      B8BNL7, B9GCC4
      Conserved Domains (1) summary
      pfam12776
      Location:98 → 192
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    2. XM_015762994.3 → XP_015618480.1  L10-interacting MYB domain-containing protein isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y882, Q0IPG0, Q2QW52
      Conserved Domains (1) summary
      pfam12776
      Location:6 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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