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    LOC9268613 zinc finger MYM-type protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268613, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9268613
    Gene description
    zinc finger MYM-type protein 1
    Locus tag
    OSNPB_100567900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 13.3), roots after flowering (RPKM 10.0) and 4 other tissues See more
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    Genomic context

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    See LOC9268613 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22513310..22534182)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene protein doublesex Neighboring gene dynamin-related protein 1E Neighboring gene uncharacterized LOC9270320 Neighboring gene VAN3-binding protein-like Neighboring gene uncharacterized LOC4349441 Neighboring gene disease resistance protein PIK6-NP Neighboring gene haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger MYM-type protein 1
    Names
    Os10g0568200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22513310..22534182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758756.2 → XP_015614242.1  zinc finger MYM-type protein 1

      Conserved Domains (3) summary
      smart00597
      Location:183 → 256
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:821 → 862
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14291
      Location:225 → 460
      DUF4371; Domain of unknown function (DUF4371)
    Nucleotide Protein
    Heading Accession and Version

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