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    LOC4332153 squalene monooxygenase SE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332153, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332153
    Gene description
    squalene monooxygenase SE1
    Locus tag
    OSNPB_030231800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 26.8), leaves before flowering (RPKM 21.8) and 6 other tissues See more
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    Genomic context

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    See LOC4332153 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7006115..7011368, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6957669..6962622, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene branched-chain-amino-acid aminotransferase 5, chloroplastic Neighboring gene squalene monooxygenase SE1 Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1 Neighboring gene transcription factor bHLH74

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables squalene monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squalene monooxygenase SE1
    Names
    Os03g0231800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7006115..7011368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775217.3 → XP_015630703.1  squalene monooxygenase SE1

      UniProtKB/TrEMBL
      Q10PK2
      Conserved Domains (4) summary
      PLN02985
      Location:155 → 618
      PLN02985; squalene monooxygenase
      pfam08491
      Location:308 → 581
      SE; Squalene epoxidase
      pfam13450
      Location:162 → 189
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
      cl00213
      Location:208 → 284
      DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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