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    LOC4347679 MYB-like transcription factor ODO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347679, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4347679
    Gene description
    MYB-like transcription factor ODO1
    Locus tag
    OSNPB_090532900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E07.2
    Expression
    Broad expression in flowers (RPKM 9.8), flower buds (RPKM 5.9) and 5 other tissues See more
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    Genomic context

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    See LOC4347679 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25357439..25367937, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20915329..20925932, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347677 Neighboring gene pentatricopeptide repeat-containing protein At4g01400, mitochondrial Neighboring gene pantothenate kinase 2-like Neighboring gene glucan endo-1,3-beta-glucosidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    MYB-like transcription factor ODO1
    Names
    Os09g0532900
    P0515E01.21
    protein ODORANT1
    putative myb-related transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25357439..25367937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304111.1 → XP_066160208.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    2. XM_066304106.1 → XP_066160203.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    3. XM_015756723.3 → XP_015612209.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8, Q8GRY3
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 185
      PLN03091; hypothetical protein; Provisional

    4. XM_066304113.1 → XP_066160210.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    5. XM_066304112.1 → XP_066160209.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    6. XM_066304109.1 → XP_066160206.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    7. XM_015756718.3 → XP_015612204.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8, Q8GRY3
      Conserved Domains (1) summary
      PLN03091
      Location:1 → 185
      PLN03091; hypothetical protein; Provisional

    8. XM_066304114.1 → XP_066160211.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    9. XM_066304110.1 → XP_066160207.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    10. XM_066304107.1 → XP_066160204.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8

    11. XM_066304108.1 → XP_066160205.1  MYB-like transcription factor ODO1

      UniProtKB/TrEMBL
      A0A0P0XQI5, B8BDU7, Q0J036, Q69SH8
    Nucleotide Protein
    Heading Accession and Version

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