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    LOC4343766 uncharacterized LOC4343766 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343766, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343766
    Gene description
    uncharacterized LOC4343766
    Locus tag
    OSNPB_070588800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 7.3), leaves after flowering (RPKM 6.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24209818..24214393)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (23985279..23989959)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 1 Neighboring gene zinc finger protein AZF3 Neighboring gene uncharacterized LOC4343767 Neighboring gene LOB domain-containing protein 37 Neighboring gene scarecrow-like protein 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA-guanine transglycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4343766
    Names
    OSJNBb0005G07.121-1
    Os07g0588800
    UPF0553 protein
    cytoplasmic protein of eukaryotic origin (38.3 kD)-like
    queuosine salvage protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24209818..24214393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791712.3 → XP_015647198.1  uncharacterized protein LOC4343766

      UniProtKB/TrEMBL
      A0A0P0X866, A0A0P0X8D0, A2YN74, Q0D513, Q84Z13
      Conserved Domains (1) summary
      pfam10343
      Location:46 → 306
      Q_salvage; Potential Queuosine, Q, salvage protein family
    Nucleotide Protein
    Heading Accession and Version

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