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    LOC9270064 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270064, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270064
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_080205150
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9270064 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6188609..6192495)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (6137579..6141986)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene hydroxycinnamoyltransferase 4-like Neighboring gene disease resistance protein RGA5-like Neighboring gene equilibrative nucleotide transporter 1 Neighboring gene histone-lysine N-methyltransferase ASHR2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os08g0205150
    P0486F07.28
    putative MLA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      6188609..6192495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793214.3 → XP_015648700.1  disease resistance protein RGA5-like

      UniProtKB/TrEMBL
      A0A0P0XCT4, A3BQL8, B8BBR4, Q6ZCF9
      Conserved Domains (3) summary
      COG4886
      Location:625 → 815
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:12 → 134
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:175 → 419
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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