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    LOC4343523 isopentenyl-diphosphate Delta-isomerase I [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343523, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343523
    Gene description
    isopentenyl-diphosphate Delta-isomerase I
    Locus tag
    OSNPB_070546000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1612_A04.101
    Expression
    Ubiquitous expression in flower buds (RPKM 75.2), flowers (RPKM 45.3) and 6 other tissues See more
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    Genomic context

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    See LOC4343523 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21853662..21856830)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21625606..21628798)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene chitin-inducible gibberellin-responsive protein 1-like Neighboring gene pentatricopeptide repeat-containing protein At4g18975, chloroplastic Neighboring gene uncharacterized LOC4343524 Neighboring gene histone H1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables isopentenyl-diphosphate delta-isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isopentenyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isopentenyl-diphosphate Delta-isomerase I
    Names
    Os07g0546000
    P0006G05.104
    putative isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21853662..21856830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791312.3 → XP_015646798.1  isopentenyl-diphosphate Delta-isomerase I

      UniProtKB/TrEMBL
      A0A0P0X7B7, Q8GVZ0, Q9M6K4
      Conserved Domains (1) summary
      PLN02552
      Location:8 → 238
      PLN02552; isopentenyl-diphosphate delta-isomerase
    Nucleotide Protein
    Heading Accession and Version

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