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    LOC4350590 transport inhibitor response 1-like protein Os11g0515500 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350590, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4350590
    Gene description
    transport inhibitor response 1-like protein Os11g0515500
    Locus tag
    OSNPB_110515500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 25.5), roots after flowering (RPKM 22.5) and 6 other tissues See more
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    Genomic context

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    See LOC4350590 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (20427335..20432940, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (18485903..18490941, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 17 Neighboring gene uncharacterized LOC107279445 Neighboring gene uncharacterized LOC9266959 Neighboring gene long chain base biosynthesis protein 2a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transport inhibitor response 1-like protein Os11g0515500
    Names
    F-box domain and LRR containing protein
    LOC_Os11g31620
    TIR1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423389.1 → NP_001410318.1  transport inhibitor response 1-like protein Os11g0515500

      Status: VALIDATED

      Source sequence(s)
      AK072358, AK105629, CB668211, CB668212, CI525899, CI742888
      UniProtKB/Swiss-Prot
      A0A0P0Y2W0, Q0ISI1, Q2R3K5
      UniProtKB/TrEMBL
      A3CBP8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      20427335..20432940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2R3K5.1 GenPept UniProtKB/Swiss-Prot:Q2R3K5

    Gene LinkOut

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