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    LOC4337970 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337970, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337970
    Gene description
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
    Locus tag
    OSNPB_050178400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 18.5), flower buds (RPKM 18.4) and 6 other tissues See more
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    Genomic context

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    See LOC4337970 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (4688117..4691426, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4669102..4672401, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene coleoptile phototropism protein 1 Neighboring gene gibberellin 3-beta-dioxygenase 1-like Neighboring gene auxin-responsive protein IAA15-like Neighboring gene pre-mRNA splicing factor SR-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
    Names
    Os05g0178400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      4688117..4691426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785211.3 → XP_015640697.1  serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like

      UniProtKB/TrEMBL
      A2Y0Y6, Q0DKB0, Q6AT11
      Conserved Domains (1) summary
      pfam01603
      Location:58 → 465
      B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    Nucleotide Protein
    Heading Accession and Version

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