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    LOC4343051 probable folate-biopterin transporter 9, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343051, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343051
    Gene description
    probable folate-biopterin transporter 9, chloroplastic
    Locus tag
    OSNPB_070425000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343051 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13932335..13935810, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13776867..13781208, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281706 Neighboring gene probable cellulose synthase A catalytic subunit 3 [UDP-forming] Neighboring gene uncharacterized LOC136357341 Neighboring gene uncharacterized LOC136357412

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable folate-biopterin transporter 8, chloroplastic; probable folate-biopterin transporter 9, chloroplastic
    Names
    OSJNBa0052I14.4
    Os07g0425000
    P0409D09.18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13932335..13935810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789548.3 → XP_015645034.1  probable folate-biopterin transporter 8, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl21472
      Location:92 → 176
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    2. XM_015789547.3 → XP_015645033.1  probable folate-biopterin transporter 9, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8BDZ7, B9FWX3
      Conserved Domains (1) summary
      pfam03092
      Location:100 → 511
      BT1; BT1 family
    Nucleotide Protein
    Heading Accession and Version

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