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    LOC4349047 F-box/LRR-repeat protein At3g48880 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349047, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4349047
    Gene description
    F-box/LRR-repeat protein At3g48880
    Locus tag
    OSNPB_100502900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349047 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19881779..19886081, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19190119..19194451, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene membrane steroid-binding protein 1-like Neighboring gene uncharacterized LOC112936687 Neighboring gene LIM domain-containing protein PLIM2b-like Neighboring gene folylpolyglutamate synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/LRR-repeat protein At3g48880
    Names
    F-box domain-containing protein
    Os10g0502900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19881779..19886081 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757242.3 → XP_015612728.1  F-box/LRR-repeat protein At3g48880

      UniProtKB/TrEMBL
      A0A8J8XDH2, A3C690, B8BHQ9, Q0IWK7, Q337F4
      Conserved Domains (3) summary
      cd09293
      Location:170 → 229
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:123 → 148
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:16 → 56
      F-box-like; F-box-like
    Nucleotide Protein
    Heading Accession and Version

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