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    LOC4324428 protein STICHEL-like 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324428, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324428
    Gene description
    protein STICHEL-like 4
    Locus tag
    OSNPB_010730900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 9.2), roots before flowering (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4324428 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31088104..31094523, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30490740..30497248, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 65 Neighboring gene uncharacterized LOC4324427 Neighboring gene uncharacterized LOC4324429 Neighboring gene pathogen-related protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of DNA replication factor C complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein STICHEL-like 4
    Names
    Os01g0730900
    P0435H01.30
    putative DNA polymerase III subunit gamma/tau

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31088104..31094523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766345.3 → XP_015621831.1  protein STICHEL-like 4 isoform X2

      UniProtKB/TrEMBL
      B9F6D9
      Conserved Domains (1) summary
      PRK14948
      Location:349 → 891
      PRK14948; DNA polymerase III subunit gamma/tau

    2. XM_015766344.3 → XP_015621830.1  protein STICHEL-like 4 isoform X1

      UniProtKB/TrEMBL
      B9F6D9
      Conserved Domains (1) summary
      PRK14948
      Location:349 → 891
      PRK14948; DNA polymerase III subunit gamma/tau
    Nucleotide Protein
    Heading Accession and Version

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