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    LOC4344351 galactinol synthase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344351, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344351
    Gene description
    galactinol synthase 2
    Locus tag
    OSNPB_070687900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_E04.126; OJ1165_F02.103
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    Genomic context

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    See LOC4344351 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29454161..29455668, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29220320..29221847, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene transcription factor TGA2.1-like Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene pentatricopeptide repeat-containing protein At1g13040, mitochondrial Neighboring gene myb-related protein 340

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Induction of chilling resistance by water stress, and cDNA sequence analysis and expression of water stress-regulated genes in rice. Takahashi R, et al. Plant Mol Biol, 1994 Oct. PMID 7948880
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactinol synthase 2
    Names
    Os07g0687900
    WSI76 protein induced by water stress

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29454161..29455668 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789894.3 → XP_015645380.1  galactinol synthase 2

      UniProtKB/TrEMBL
      A0A5S6R7K3, A2YQ42, Q40710, Q8H5G0
      Conserved Domains (1) summary
      PLN00176
      Location:2 → 328
      PLN00176; galactinol synthase
    Nucleotide Protein
    Heading Accession and Version

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