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    LOC4336081 betaine aldehyde dehydrogenase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336081, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336081
    Gene description
    betaine aldehyde dehydrogenase 1-like
    Locus tag
    OSNPB_040464200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BADH; BADH1; OsBADH1
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    Genomic context

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    See LOC4336081 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23665796..23670723, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23171479..23176326, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g11690-like Neighboring gene heavy metal-associated isoprenylated plant protein 16 Neighboring gene protein NRT1/ PTR FAMILY 6.4 Neighboring gene plant UBX domain-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa). Tang W, et al. Plant Mol Biol, 2014 Nov. PMID 25150410
    2. Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa). He Q, et al. PLoS One, 2015. PMID 26258482, Free PMC Article
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. analysis of BADH1 and BADH2 in rice (Oryza sativa) reveals that BADH2 was domesticated during rice evolution, while BADH1 was not selected by human beings
      Title: Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).
    2. Data indicate that betaine-aldehyde dehydrogenase (AK103582; OsBADH1) was ubiquitously expressed in different organs, including roots, stems, leaves and flowers.
      Title: RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    betaine aldehyde dehydrogenase 1
    Names
    LOC_Os04g39020
    OSJNBa0060P14.8
    betaine-aldehyde dehydrogenase
    NP_001406345.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419416.1 → NP_001406345.1  betaine aldehyde dehydrogenase 1

      Status: VALIDATED

      Source sequence(s)
      AK103582, CB663530, CB663531, CI537109, CI740704
      UniProtKB/Swiss-Prot
      O24174, Q0JCK7, Q7F9Q3
      UniProtKB/TrEMBL
      A0A8F9RW61, A0A8F9RWA4, A0A8F9RWQ6, A0A8F9RWW2, A0A8F9WJE3, A0A8F9WKC1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23665796..23670723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24174.1 GenPept UniProtKB/Swiss-Prot:O24174

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