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    LOC4346577 sufE-like protein 1, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346577, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346577
    Gene description
    sufE-like protein 1, chloroplastic/mitochondrial
    Locus tag
    OSNPB_090270900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 27.9), leaves after flowering (RPKM 18.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (9635246..9637449, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (5306873..5309085, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized LOC136351765 Neighboring gene uncharacterized LOC107282086 Neighboring gene uncharacterized LOC136351893

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sufE-like protein 1, chloroplastic/mitochondrial
    Names
    B1012G04.31
    Os09g0270900
    P0012A04.17
    putative plastid protein SufE

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      9635246..9637449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795835.3 → XP_015651321.1  sufE-like protein 1, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      A0A0P0XJ88, A3BWQ5, Q0J317, Q6K258
      Conserved Domains (2) summary
      pfam01722
      Location:287 → 365
      BolA; BolA-like protein
      pfam02657
      Location:83 → 204
      SufE; Fe-S metabolism associated domain
    Nucleotide Protein
    Heading Accession and Version

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