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    LOC4324899 probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324899, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4324899
    Gene description
    probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
    Locus tag
    OSNPB_010888500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 41.0), flower buds (RPKM 31.5) and 6 other tissues See more
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    Genomic context

    See LOC4324899 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39249051..39255394, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38618736..38625082, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355506 Neighboring gene NAC domain-containing protein 35 Neighboring gene MLO-like protein 1 Neighboring gene serine/threonine-protein kinase rio2 Neighboring gene protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
    Names
    B1099D03.28
    Os01g0888500
    P0434C04.48
    putative formylglycineamide ribotide amidotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39249051..39255394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762141.3XP_015617627.1  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      A2WXS1, Q5N821, Q5N8R3
      Conserved Domains (4) summary
      cd02203
      Location:313697
      PurL_repeat1; PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, ...
      cd02204
      Location:7981071
      PurL_repeat2; PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, ...
      PLN03206
      Location:1101418
      PLN03206; phosphoribosylformylglycinamidine synthase; Provisional
      pfam13507
      Location:11491418
      GATase_5; CobB/CobQ-like glutamine amidotransferase domain