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    LOC4343038 sterol 3-beta-glucosyltransferase UGT80A2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343038, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343038
    Gene description
    sterol 3-beta-glucosyltransferase UGT80A2
    Locus tag
    OSNPB_070419500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1123_B01.122
    Expression
    Ubiquitous expression in roots before flowering (RPKM 18.5), flower buds (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4343038 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13554606..13567462)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13399134..13412008)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At5g41330 Neighboring gene thaumatin-like protein 1b Neighboring gene uncharacterized LOC136357506 Neighboring gene uncharacterized LOC136357371 Neighboring gene uncharacterized LOC107281690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sterol 3-beta-glucosyltransferase UGT80A2
    Names
    Os07g0419500
    putative UDP-glucose:sterol glucosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13554606..13567462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792463.3 → XP_015647949.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YR50, B7F986, B8B5G7, B9FWV7, Q8H5W0
      Conserved Domains (1) summary
      cd03784
      Location:129 → 545
      GT1_Gtf-like; UDP-glycosyltransferases and similar proteins

    2. XM_015792464.2 → XP_015647950.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X3

      UniProtKB/TrEMBL
      Q8H5W0
      Conserved Domains (2) summary
      cd03784
      Location:51 → 467
      GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...
      COG1819
      Location:50 → 462
      YjiC; UDP:flavonoid glycosyltransferase YjiC, YdhE family [Carbohydrate transport and metabolism]

    3. XM_026027071.2 → XP_025882856.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X2

      UniProtKB/TrEMBL
      Q8H5W0
      Conserved Domains (1) summary
      cd03784
      Location:102 → 518
      GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...

    4. XM_015792465.3 → XP_015647951.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X3

      UniProtKB/TrEMBL
      Q8H5W0
      Conserved Domains (2) summary
      cd03784
      Location:51 → 467
      GT1_Gtf_like; This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the ...
      COG1819
      Location:50 → 462
      YjiC; UDP:flavonoid glycosyltransferase YjiC, YdhE family [Carbohydrate transport and metabolism]

    5. XM_066312512.1 → XP_066168609.1  sterol 3-beta-glucosyltransferase UGT80A2 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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