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    LOC4334742 vacuolar protein sorting-associated protein 9A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334742, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334742
    Gene description
    vacuolar protein sorting-associated protein 9A
    Locus tag
    OSNPB_030842700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334742 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36397607..36401057)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35424462..35428046)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269089 Neighboring gene uncharacterized LOC4334740 Neighboring gene 11-beta-hydroxysteroid dehydrogenase B Neighboring gene transfer RNA serine (anticodon AGA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 9A; vacuolar protein sorting-associated protein 9A-like
    Names
    Os03g0842700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36397607..36401057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308831.1 → XP_066164928.1  vacuolar protein sorting-associated protein 9A isoform X2

      UniProtKB/TrEMBL
      B8AN76

    2. XM_015774212.3 → XP_015629698.1  vacuolar protein sorting-associated protein 9A-like isoform X1

      UniProtKB/TrEMBL
      B9F7I9
      Conserved Domains (2) summary
      pfam02204
      Location:140 → 245
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:31 → 95
      DUF5601; Domain of unknown function (DUF5601)

    RNA

    1. XR_010740200.1 RNA Sequence

    2. XR_001544313.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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