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    LOC4332152 squalene monooxygenase SE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332152, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332152
    Gene description
    squalene monooxygenase SE1
    Locus tag
    OSNPB_030231700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 10.4), flowers (RPKM 7.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6999146..7005836, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6950857..6957434, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene inositol-tetrakisphosphate 1-kinase 2-like Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene branched-chain-amino-acid aminotransferase 5, chloroplastic Neighboring gene squalene monooxygenase SE1 Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables squalene monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squalene epoxidase 3; squalene monooxygenase SE1; squalene monooxygenase SE2
    Names
    Os03g0231700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6999146..7005836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775221.3 → XP_015630707.1  squalene monooxygenase SE1 isoform X4

      UniProtKB/TrEMBL
      Q10PK4
      Conserved Domains (1) summary
      pfam08491
      Location:119 → 392
      SE; Squalene epoxidase

    2. XM_015775219.3 → XP_015630705.1  squalene epoxidase 3 isoform X1

      UniProtKB/TrEMBL
      Q10PK6
      Conserved Domains (1) summary
      PLN02985
      Location:57 → 517
      PLN02985; squalene monooxygenase

    3. XM_015775220.3 → XP_015630706.1  squalene monooxygenase SE2 isoform X2

      UniProtKB/TrEMBL
      Q0DTR2, Q10PK4, Q10PK5
      Conserved Domains (1) summary
      PLN02985
      Location:57 → 517
      PLN02985; squalene monooxygenase

    4. XM_066308260.1 → XP_066164357.1  squalene monooxygenase SE1 isoform X5

      UniProtKB/TrEMBL
      Q10PK4

    5. XM_066308259.1 → XP_066164356.1  squalene monooxygenase SE2 isoform X3

      UniProtKB/TrEMBL
      A2XE79, A3AFR9, Q10PK4, Q8GTX8
    Nucleotide Protein
    Heading Accession and Version

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