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    LOC4323929 uncharacterized LOC4323929 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4323929, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4323929
    Gene description
    uncharacterized LOC4323929
    Locus tag
    OSNPB_010729600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 4.5), milk grains (RPKM 3.7) and 1 other tissue See more
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    Genomic context

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    See LOC4323929 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31010106..31013037, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30413698..30415888, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein VTE6, chloroplastic Neighboring gene uncharacterized LOC107279228 Neighboring gene receptor like protein 29 Neighboring gene uncharacterized LOC4323928 Neighboring gene uncharacterized LOC4324420 Neighboring gene subtilisin-like protease SBT4.15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4323929
    Names
    Os01g0729600
    P0435H01.13
    P0456A01.30
    probable cysteine desulfurase
    putative aminotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      31010106..31013037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772403.3 → XP_015627889.1  uncharacterized protein LOC4323929

      UniProtKB/TrEMBL
      A0A0P0V7Q4, A2WUQ8, Q0JJM8, Q9AX15
      Conserved Domains (1) summary
      COG0520
      Location:79 → 524
      CsdA; Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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