LOC4340376 26S proteasome regulatory subunit 7A-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4340376
Gene description: 26S proteasome regulatory subunit 7A-like
Locus tag: OSNPB_060192600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: RPT1B; OsRPT1; OsJ_20424
Expression: Ubiquitous expression in flower buds (RPKM 78.9), mature seeds (RPKM 76.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	6	NC_089040.1 (4832270..4835746)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (4667475..4670858)

Chromosome 6 - NC_089040.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables proteasome-activating activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of proteasome regulatory particle, base subcomplex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: 26S proteasome regulatory subunit 7B

Names: 26S protease regulatory subunit 7; 26S protease regulatory subunit 7B; 26S proteasome AAA-ATPase subunit RPT1B; 26S proteasome regulatory particle triple-A ATPase subunit1; 26S proteasome subunit 7B; LOC_Os06g09290; OSJNBa0090D06.53; P0698A06.13; Regulatory particle triple-A ATPase subunit 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.