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    LOC4326041 uncharacterized LOC4326041 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326041, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4326041
    Gene description
    uncharacterized LOC4326041
    Locus tag
    OSNPB_010121200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0684C01.8
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    Genomic context

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    See LOC4326041 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1193888..1197634, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1186828..1190196, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268597 Neighboring gene uncharacterized LOC4326040 Neighboring gene uncharacterized LOC4326042 Neighboring gene uncharacterized LOC4326043

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326041
    Names
    Os01g0121200
    putative protein-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1193888..1197634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785458.3 → XP_015640944.1  uncharacterized protein LOC4326041 isoform X3

      Conserved Domains (2) summary
      smart00744
      Location:55 → 100
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:106 → 222
      DUF3675; Protein of unknown function (DUF3675)

    2. XM_066308534.1 → XP_066164631.1  uncharacterized protein LOC4326041 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UY93, B8ACZ6, B9EZ94, Q0JR40

    3. XM_015785437.3 → XP_015640923.1  uncharacterized protein LOC4326041 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UY93, B8ACZ6, B9EZ94, Q0JR40, Q5ZEM3
      Conserved Domains (2) summary
      smart00744
      Location:55 → 100
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:106 → 222
      DUF3675; Protein of unknown function (DUF3675)

    4. XM_015785453.3 → XP_015640939.1  uncharacterized protein LOC4326041 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UY93, B8ACZ6, B9EZ94, Q0JR40, Q5ZEM3
      Conserved Domains (2) summary
      smart00744
      Location:55 → 100
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:106 → 222
      DUF3675; Protein of unknown function (DUF3675)

    5. XM_066308536.1 → XP_066164633.1  uncharacterized protein LOC4326041 isoform X3

    6. XM_015785432.3 → XP_015640918.1  uncharacterized protein LOC4326041 isoform X1

      Conserved Domains (2) summary
      smart00744
      Location:67 → 112
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      pfam12428
      Location:119 → 233
      DUF3675; Protein of unknown function (DUF3675)
    Nucleotide Protein
    Heading Accession and Version

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