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    LOC4324067 retrovirus-related Pol polyprotein from transposon TNT 1-94 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324067, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4324067
    Gene description
    retrovirus-related Pol polyprotein from transposon TNT 1-94
    Locus tag
    OSNPB_010160200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324067 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3155446..3159990, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3143311..3151953, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pyruvate decarboxylase 2 Neighboring gene receptor-like protein 6 Neighboring gene receptor-like protein 7 Neighboring gene receptor-like protein 7 Neighboring gene receptor-like protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retrovirus-related Pol polyprotein from transposon TNT 1-94
    Names
    Os01g0160200
    P0041E11.27
    putative verticillium wilt disease resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3155446..3159990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306715.1 → XP_066162812.1  retrovirus-related Pol polyprotein from transposon TNT 1-94

      UniProtKB/TrEMBL
      C7IXQ1, Q7F814

    2. XM_015789833.3 → XP_015645319.2  retrovirus-related Pol polyprotein from transposon TNT 1-94

      UniProtKB/TrEMBL
      C7IXQ1, Q7F814
    Nucleotide Protein
    Heading Accession and Version

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