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    LOC4348464 glutamate--tRNA ligase, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348464, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348464
    Gene description
    glutamate--tRNA ligase, cytoplasmic
    Locus tag
    OSNPB_100369000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 36.8), flowers (RPKM 30.1) and 6 other tissues See more
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    Genomic context

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    See LOC4348464 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (12183948..12187796, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (11581403..11585302, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD96 family Neighboring gene uncharacterized LOC9271400 Neighboring gene small nucleolar RNA SNORD96 family Neighboring gene uncharacterized LOC136353647 Neighboring gene uncharacterized LOC107279145 Neighboring gene putative yippee-like protein Os10g0369500

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamate-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of methionyl glutamyl tRNA synthetase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate--tRNA ligase, cytoplasmic
    Names
    Os10g0369000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      12183948..12187796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758741.3 → XP_015614227.1  glutamate--tRNA ligase, cytoplasmic

      UniProtKB/TrEMBL
      A2Z6H7, A3C430, Q0IY50, Q8S5M6
      Conserved Domains (1) summary
      PLN02907
      Location:1 → 713
      PLN02907; glutamate-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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