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    LOC4327988 thiosulfate sulfurtransferase 18 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327988, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4327988
    Gene description
    thiosulfate sulfurtransferase 18
    Locus tag
    OSNPB_020102300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.17
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    Genomic context

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    See LOC4327988 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (130755..133457)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (124618..127140)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At3g28850 Neighboring gene amino acid permease 3 Neighboring gene uncharacterized LOC4327989 Neighboring gene phytochrome-interacting ankyrin-repeat protein 2 Neighboring gene small nuclear ribonucleoprotein SmD3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thiosulfate sulfurtransferase 18
    Names
    B1370C05.27
    Os02g0102300
    putative senescence-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      130755..133457
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771320.3 → XP_015626806.1  thiosulfate sulfurtransferase 18 isoform X2

      UniProtKB/TrEMBL
      B7ED41, B8AGV2, Q6YU82, Q6ZFK7
      Conserved Domains (1) summary
      cl00125
      Location:8 → 131
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    2. XM_015771321.3 → XP_015626807.1  thiosulfate sulfurtransferase 18 isoform X4

      UniProtKB/TrEMBL
      B8AGV2
      Conserved Domains (1) summary
      cl00125
      Location:8 → 113
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    3. XM_066307935.1 → XP_066164032.1  thiosulfate sulfurtransferase 18 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VDN0, Q0E4S8

    4. XM_066307937.1 → XP_066164034.1  thiosulfate sulfurtransferase 18 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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