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    LOC4338982 uncharacterized LOC4338982 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338982, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338982
    Gene description
    uncharacterized LOC4338982
    Locus tag
    OSNPB_050455800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 23.7), leaves after flowering (RPKM 21.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22507356..22510522)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22393904..22397105)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene PRA1 family protein A1 Neighboring gene uracil phosphoribosyltransferase Neighboring gene pentatricopeptide repeat-containing protein At2g27610 Neighboring gene uncharacterized protein At2g39795, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338982
    Names
    Os05g0455800
    protein YIPF1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22507356..22510522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310578.1 → XP_066166675.1  uncharacterized protein LOC4338982 isoform X4

    2. XM_066310576.1 → XP_066166673.1  uncharacterized protein LOC4338982 isoform X1

      UniProtKB/TrEMBL
      B8AYU5

    3. XM_066310577.1 → XP_066166674.1  uncharacterized protein LOC4338982 isoform X2

      UniProtKB/TrEMBL
      B8AYU5

    4. XM_015782050.3 → XP_015637536.1  uncharacterized protein LOC4338982 isoform X5

      Conserved Domains (1) summary
      pfam04893
      Location:89 → 207
      Yip1; Yip1 domain

    5. XM_015782049.3 → XP_015637535.1  uncharacterized protein LOC4338982 isoform X3

      UniProtKB/TrEMBL
      B8AYU5, B9FJD8, Q60EM1
      Conserved Domains (1) summary
      pfam04893
      Location:105 → 267
      Yip1; Yip1 domain

    RNA

    1. XR_010741406.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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