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    LOC4343637 scarecrow-like protein 23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343637, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343637
    Gene description
    scarecrow-like protein 23
    Locus tag
    OSNPB_070567700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1092_A07.120
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    Genomic context

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    See LOC4343637 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23034613..23038747)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22807041..22809434)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene obtusifoliol 14-alpha demethylase-like Neighboring gene uncharacterized protein At4g19900 Neighboring gene uncharacterized LOC107278343 Neighboring gene cytochrome c6, chloroplastic Neighboring gene protein CYSTEINE-RICH TRANSMEMBRANE MODULE 4 Neighboring gene exocyst complex component EXO84C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in bundle sheath cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 23
    Names
    Os07g0567700
    SCARECROW protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23034613..23038747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789496.3 → XP_015644982.1  scarecrow-like protein 23

      UniProtKB/TrEMBL
      A0A0P0X7S9, A2YMR9, A3BLA0
      Conserved Domains (1) summary
      pfam03514
      Location:75 → 433
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version

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