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    LOC4330750 probable beta-D-xylosidase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330750, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330750
    Gene description
    probable beta-D-xylosidase 7
    Locus tag
    OSNPB_020752200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1288_G09.2
    Expression
    Biased expression in flower buds (RPKM 52.2), flowers (RPKM 41.8) and 2 other tissues See more
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    Genomic context

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    See LOC4330750 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32105127..32109494, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31609775..31614171, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene type I inositol polyphosphate 5-phosphatase 5 Neighboring gene uncharacterized LOC4330749 Neighboring gene uncharacterized LOC4330751 Neighboring gene uncharacterized LOC107276601

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-L-arabinofuranosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xylan 1,4-beta-xylosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arabinan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xylan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable beta-D-xylosidase 7
    Names
    Os02g0752200
    P0431B06.43
    putative beta-D-xylosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32105127..32109494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767519.3 → XP_015623005.1  probable beta-D-xylosidase 7

      UniProtKB/TrEMBL
      A0A0P0VQ41, B8AIS2, Q6Z8I7, Q6ZGQ4
      Conserved Domains (1) summary
      PLN03080
      Location:32 → 777
      PLN03080; Probable beta-xylosidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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