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    LOC4329690 glyoxylate/succinic semialdehyde reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329690, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329690
    Gene description
    glyoxylate/succinic semialdehyde reductase 1
    Locus tag
    OSNPB_020562700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1712_E04.5
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    Genomic context

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    See LOC4329690 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21824425..21828675)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21344267..21348527)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene MLO-like protein 1 Neighboring gene F-box/kelch-repeat protein SKIP20 Neighboring gene uncharacterized LOC112937887

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxybutyrate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxylate/succinic semialdehyde reductase 1
    Names
    Os02g0562700
    gamma hydroxybutyrate dehydrogenase-like protein
    putative gamma hydroxybutyrate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21824425..21828675
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767691.2 → XP_015623177.1  glyoxylate/succinic semialdehyde reductase 1

      UniProtKB/TrEMBL
      B8ADY7, Q0E0C0, Q6ZGB8, Q84VC8
      Conserved Domains (1) summary
      COG2084
      Location:1 → 285
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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