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    LOC4328828 aspartate aminotransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328828, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328828
    Gene description
    aspartate aminotransferase, mitochondrial
    Locus tag
    OSNPB_020236000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1077_A12.15
    Expression
    Broad expression in milk grains (RPKM 123.6), flowers (RPKM 35.9) and 4 other tissues See more
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    Genomic context

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    See LOC4328828 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7731770..7736008)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7706616..7710908)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL5 Neighboring gene berberine bridge enzyme-like Cyn d 4 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At5g45780 Neighboring gene shaggy-related protein kinase GSK4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L. Song J, et al. DNA Res, 1996 Oct 31. PMID 9039500
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartate aminotransferase, mitochondrial
    Names
    Os02g0236000
    putative aspartate transaminase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7731770..7736008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770738.3 → XP_015626224.1  aspartate aminotransferase, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8AEL7
      Conserved Domains (2) summary
      PLN02397
      Location:33 → 438
      PLN02397; aspartate transaminase
      pfam00155
      Location:59 → 431
      Aminotran_1_2; Aminotransferase class I and II

    2. XM_015770739.3 → XP_015626225.1  aspartate aminotransferase, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8AEL7, B9F4H1, Q0E2I6, Q6EUS6
      Conserved Domains (1) summary
      PLN02397
      Location:33 → 432
      PLN02397; aspartate transaminase
    Nucleotide Protein
    Heading Accession and Version

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