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    LOC4325617 dynein light chain LC6, flagellar outer arm [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325617, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4325617
    Gene description
    dynein light chain LC6, flagellar outer arm
    Locus tag
    OSNPB_010760000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 172.9), flowers (RPKM 21.3) and 1 other tissue See more
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    Genomic context

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    See LOC4325617 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31981889..31982835)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2 Neighboring gene nucleobase-ascorbate transporter 2 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene rop guanine nucleotide exchange factor 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of dynein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dynein light chain LC6, flagellar outer arm
    Names
    Os01g0760000
    P0460E08.16
    putative dynein light chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31981889..31982835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773120.2 → XP_015628606.1  dynein light chain LC6, flagellar outer arm

      UniProtKB/TrEMBL
      A0A8J8XBN6, A2WVA3, A2ZY14, Q09IX9, Q94DT1
      Conserved Domains (1) summary
      pfam01221
      Location:5 → 89
      Dynein_light; Dynein light chain type 1
    Nucleotide Protein
    Heading Accession and Version

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