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    LOC4324015 uncharacterized LOC4324015 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324015, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4324015
    Gene description
    uncharacterized LOC4324015
    Locus tag
    OSNPB_010968300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1656_A11.10
    Expression
    Restricted expression toward roots before flowering (RPKM 1.2) See more
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    Genomic context

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    See LOC4324015 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42706524..42707924)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324013 Neighboring gene uncharacterized LOC4324014 Neighboring gene uncharacterized LOC4324016 Neighboring gene phospholipase A1-II 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324015
    Names
    Os01g0968300
    putative root cap protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      42706524..42707924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779913.1 → XP_015635399.1  uncharacterized protein LOC4324015

      UniProtKB/TrEMBL
      A2WZH7, A2WZH9, A3A1X3, Q0JFP7, Q8SA01
      Conserved Domains (1) summary
      pfam06830
      Location:260 → 316
      Root_cap; Root cap
    Nucleotide Protein
    Heading Accession and Version

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